Index

Symbols

--contr-fraction niquery-select command line option --force niquery-aggregate command line option niquery-analyze command line option niquery-collect command line option niquery-index command line option niquery-select command line option --max-timepoints niquery-select command line option --min-timepoints niquery-select command line option --modality niquery-collect command line option

--species niquery-collect command line option --suffix niquery-analyze command line option --total-runs niquery-select command line option -f niquery-aggregate command line option niquery-analyze command line option niquery-collect command line option niquery-index command line option niquery-select command line option

A

append_label_to_filename() (in module niquery.io.utils)

B

bids_dataset_name_pattern() (in module niquery.data.utils)

C

configure_logging() (in module niquery.utils.logging)

CONTR_FRACTION (in module niquery.cli.run)

E

edges_to_dataframe() (in module niquery.query.querying)

extract_volume_features() (in module niquery.analysis.featuring)

F

fetch_datalad_remote_files() (in module niquery.data.fetching) fetch_page() (in module niquery.query.querying) fetch_pages() (in module niquery.query.querying) filter_modality_datasets() (in module niquery.analysis.filtering) filter_modality_records() (in module niquery.analysis.filtering) filter_non_conforming_ds() (in module niquery.data.utils)

filter_nonrelevant_datasets() (in module niquery.analysis.filtering) filter_on_run_contribution() (in module niquery.analysis.filtering) filter_on_timepoint_count() (in module niquery.analysis.filtering) filter_runs() (in module niquery.analysis.filtering) filter_species_datasets() (in module niquery.analysis.filtering) force_output() (in module niquery.cli.utils)

G

get_cursors() (in module niquery.query.querying) get_nii_header_s3() (in module niquery.analysis.featuring)

get_nii_header_url() (in module niquery.analysis.featuring) get_nii_timepoints_s3() (in module niquery.analysis.featuring) get_nii_timepoints_url() (in module niquery.analysis.featuring)

H

have_datalad() (in module niquery.utils.optpckg)

I

identify_modality_files() (in module niquery.analysis.filtering) identify_relevant_runs() (in module niquery.analysis.filtering) IN_DIRNAME niquery-analyze command line option niquery-select command line option

IN_FILENAME niquery-aggregate command line option niquery-collect command line option

M

MAX_QUERY_SIZE (in module niquery.query.querying) MAX_TIMEPOINTS (in module niquery.cli.run) MAX_WORKERS (in module niquery.cli.run) MIN_TIMEPOINTS (in module niquery.cli.run) module niquery.analysis niquery.analysis.featuring niquery.analysis.filtering niquery.cli niquery.cli.run niquery.cli.utils niquery.data niquery.data.fetching niquery.data.remotes niquery.data.utils niquery.io niquery.io.utils niquery.query niquery.query.querying niquery.utils niquery.utils.attributes niquery.utils.decorators niquery.utils.logging niquery.utils.optpckg

N

NAME niquery-aggregate command line option niquery-aggregate command line option --force -f IN_FILENAME NAME OUT_DIRNAME niquery-analyze command line option --force --suffix -f IN_DIRNAME OUT_DIRNAME niquery-collect command line option --force --modality --species -f IN_FILENAME OUT_DIRNAME niquery-index command line option --force -f OUT_FILENAME REMOTE niquery-select command line option --contr-fraction --force --max-timepoints --min-timepoints --total-runs -f IN_DIRNAME OUT_FILENAME SEED niquery.analysis module

niquery.analysis.featuring module niquery.analysis.filtering module niquery.cli module niquery.cli.run module niquery.cli.utils module niquery.data module niquery.data.fetching module niquery.data.remotes module niquery.data.utils module niquery.io module niquery.io.utils module niquery.query module niquery.query.querying module niquery.utils module niquery.utils.attributes module niquery.utils.decorators module niquery.utils.logging module niquery.utils.optpckg module

O

OUT_DIRNAME niquery-aggregate command line option niquery-analyze command line option niquery-collect command line option

OUT_FILENAME niquery-index command line option niquery-select command line option

P

post_with_retry() (in module niquery.query.querying)

Q

query_dataset_files() (in module niquery.query.querying) query_datasets() (in module niquery.query.querying)

query_snapshot_files() (in module niquery.query.querying) query_snapshot_tree() (in module niquery.query.querying)

R

REMOTE niquery-index command line option

require_datalad() (in module niquery.utils.decorators) require_datalad_click() (in module niquery.utils.decorators)

S

SEED niquery-select command line option

T

TOTAL_RUNS (in module niquery.cli.run)

V

verify_output_path() (in module niquery.cli.utils)

W

write_dataset_file_lists() (in module niquery.io.utils)

write_dataset_paths() (in module niquery.io.utils) write_dataset_tags() (in module niquery.io.utils)