Index A | B | C | D | E | F | G | I | L | M | O | P | R | S | T | U | X A add() (sdcflows.utils.bimap.bidict method) ANAT (sdcflows.fieldmaps.EstimatorType attribute) apply() (sdcflows.transform.B0FieldTransform method) ApplyCoeffsField (class in sdcflows.interfaces.bspline) au2rads() (in module sdcflows.utils.phasemanip) B B0FieldTransform (class in sdcflows.transform) bidict (class in sdcflows.utils.bimap) bids_id (sdcflows.fieldmaps.FieldmapEstimation attribute) bids_root (sdcflows.fieldmaps.FieldmapFile attribute) BinaryDilation (class in sdcflows.interfaces.brainmask) brain_masker() (in module sdcflows.utils.tools) BrainExtraction (class in sdcflows.interfaces.brainmask) bspline_grid() (in module sdcflows.interfaces.bspline) BSplineApprox (class in sdcflows.interfaces.bspline) C check_path() (sdcflows.fieldmaps.FieldmapFile method) CheckB0Units (class in sdcflows.interfaces.fmap) clear() (sdcflows.utils.bimap.bidict method) clear_registry() (in module sdcflows.fieldmaps) coeffs (sdcflows.transform.B0FieldTransform attribute) ConvertWarp (class in sdcflows.interfaces.utils) coolwarm_transparent() (in module sdcflows.viz.utils) D delta_te() (in module sdcflows.utils.phasemanip) DenoiseImage (class in sdcflows.interfaces.utils) Deoblique (class in sdcflows.interfaces.utils) DerivativesDataSink (class in sdcflows.workflows.outputs) disp_to_fmap() (in module sdcflows.transform) DisplacementsField2Fieldmap (class in sdcflows.interfaces.fmap) E entities (sdcflows.fieldmaps.FieldmapFile attribute) epi_mask() (in module sdcflows.utils.epimanip) EstimatorRegistry (class in sdcflows.utils.bimap) EstimatorType (class in sdcflows.fieldmaps) F FieldmapEstimation (class in sdcflows.fieldmaps) FieldmapFile (class in sdcflows.fieldmaps) FieldmapReportlet (class in sdcflows.interfaces.reportlets) find_estimators() (in module sdcflows.utils.wrangler) find_meta (sdcflows.fieldmaps.FieldmapFile attribute) fit() (sdcflows.transform.B0FieldTransform method) Flatten (class in sdcflows.interfaces.utils) fmap_to_disp() (in module sdcflows.transform) front() (in module sdcflows.utils.misc) G get_free_mem() (in module sdcflows.utils.misc) get_identifier() (in module sdcflows.fieldmaps) get_key() (sdcflows.utils.bimap.EstimatorRegistry method) get_trt() (in module sdcflows.utils.epimanip) get_workflow() (sdcflows.fieldmaps.FieldmapEstimation method) GetReadoutTime (class in sdcflows.interfaces.epi) grid_bspline_weights() (in module sdcflows.transform) I init_3dQwarp_wf() (in module sdcflows.workflows.fit.pepolar) init_brainextraction_wf() (in module sdcflows.workflows.ancillary) init_coeff2epi_wf() (in module sdcflows.workflows.apply.registration) init_fmap_derivatives_wf() (in module sdcflows.workflows.outputs) init_fmap_preproc_wf() (in module sdcflows.workflows.base) init_fmap_reports_wf() (in module sdcflows.workflows.outputs) init_fmap_wf() (in module sdcflows.workflows.fit.fieldmap) init_magnitude_wf() (in module sdcflows.workflows.fit.fieldmap) init_phdiff_wf() (in module sdcflows.workflows.fit.fieldmap) init_syn_preprocessing_wf() (in module sdcflows.workflows.fit.syn) init_syn_sdc_wf() (in module sdcflows.workflows.fit.syn) init_topup_wf() (in module sdcflows.workflows.fit.pepolar) init_unwarp_wf() (in module sdcflows.workflows.apply.correction) L last() (in module sdcflows.utils.misc) M MAPPED (sdcflows.fieldmaps.EstimatorType attribute) match_histogram() (in module sdcflows.workflows.fit.syn) metadata (sdcflows.fieldmaps.FieldmapFile attribute) MetadataError method (sdcflows.fieldmaps.FieldmapEstimation attribute) module sdcflows.fieldmaps sdcflows.interfaces sdcflows.interfaces.brainmask sdcflows.interfaces.bspline sdcflows.interfaces.epi sdcflows.interfaces.fmap sdcflows.interfaces.reportlets sdcflows.interfaces.utils sdcflows.transform sdcflows.utils sdcflows.utils.bimap sdcflows.utils.epimanip sdcflows.utils.misc sdcflows.utils.phasemanip sdcflows.utils.tools sdcflows.utils.wrangler sdcflows.viz sdcflows.viz.utils sdcflows.workflows sdcflows.workflows.ancillary sdcflows.workflows.apply sdcflows.workflows.apply.correction sdcflows.workflows.apply.registration sdcflows.workflows.base sdcflows.workflows.fit sdcflows.workflows.fit.fieldmap sdcflows.workflows.fit.pepolar sdcflows.workflows.fit.syn sdcflows.workflows.outputs O out_path_base (sdcflows.workflows.outputs.DerivativesDataSink attribute) P PadSlices (class in sdcflows.interfaces.utils) path (sdcflows.fieldmaps.FieldmapFile attribute) paths() (sdcflows.fieldmaps.FieldmapEstimation method) PEPOLAR (sdcflows.fieldmaps.EstimatorType attribute) PHASEDIFF (sdcflows.fieldmaps.EstimatorType attribute) Phasediff2Fieldmap (class in sdcflows.interfaces.fmap) PhaseMap2rads (class in sdcflows.interfaces.fmap) phdiff2fmap() (in module sdcflows.utils.phasemanip) plot_registration() (in module sdcflows.viz.utils) R Reoblique (class in sdcflows.interfaces.utils) S sdcflows.fieldmaps module sdcflows.interfaces module sdcflows.interfaces.brainmask module sdcflows.interfaces.bspline module sdcflows.interfaces.epi module sdcflows.interfaces.fmap module sdcflows.interfaces.reportlets module sdcflows.interfaces.utils module sdcflows.transform module sdcflows.utils module sdcflows.utils.bimap module sdcflows.utils.epimanip module sdcflows.utils.misc module sdcflows.utils.phasemanip module sdcflows.utils.tools module sdcflows.utils.wrangler module sdcflows.viz module sdcflows.viz.utils module sdcflows.workflows module sdcflows.workflows.ancillary module sdcflows.workflows.apply module sdcflows.workflows.apply.correction module sdcflows.workflows.apply.registration module sdcflows.workflows.base module sdcflows.workflows.fit module sdcflows.workflows.fit.fieldmap module sdcflows.workflows.fit.pepolar module sdcflows.workflows.fit.syn module sdcflows.workflows.outputs module shifts (sdcflows.transform.B0FieldTransform attribute) sources (sdcflows.fieldmaps.FieldmapEstimation attribute) (sdcflows.utils.bimap.EstimatorRegistry property) subtract_phases() (in module sdcflows.utils.phasemanip) SubtractPhases (class in sdcflows.interfaces.fmap) suffix (sdcflows.fieldmaps.FieldmapFile attribute) T to_displacements() (sdcflows.transform.B0FieldTransform method) TOPUPCoeffReorient (class in sdcflows.interfaces.bspline) TransformCoefficients (class in sdcflows.interfaces.bspline) U UniformGrid (class in sdcflows.interfaces.utils) Union (class in sdcflows.interfaces.brainmask) UNKNOWN (sdcflows.fieldmaps.EstimatorType attribute) X xfm (sdcflows.transform.B0FieldTransform attribute)