Datasets with multiple phase encoded directions.
- sdcflows.workflows.fit.pepolar.init_3dQwarp_wf(omp_nthreads=1, debug=False, name='pepolar_estimate_wf')¶
Create the PEPOLAR field estimation workflow based on AFNI’s
This workflow takes in two EPI files that MUST have opposed PE direction. Therefore, EPIs with orthogonal PE directions are not supported.
- sdcflows.workflows.fit.pepolar.init_topup_wf(grid_reference=0, omp_nthreads=1, sloppy=False, debug=False, name='pepolar_estimate_wf')¶
Create the PEPOLAR field estimation workflow based on FSL’s
int) – Index of the volume (after flattening) that will be taken for gridding reference.
bool) – Whether a fast configuration of topup (less accurate) should be applied.
bool) – Run in debug mode
str) – Name for this workflow
int) – Parallelize internal tasks across the number of CPUs given by this option.
str) – The path of the estimated fieldmap.
str) – The path of an unwarped conversion of files in
str) – The path of mask corresponding to the
str) – Short description of the estimation method that was run.