Make sure all of SDCflows’ External Dependencies are installed.
These tools must be installed and their binaries available in the
A relatively interpretable description of how your environment can be set-up
is found in the Dockerfile.
As an additional installation setting, FreeSurfer requires a license file.
On a functional Python 3.5 (or above) environment with
SDCflows can be installed using the habitual command
$ python -m pip install sdcflows
Check your installation with the following command line
$ python -c "from sdcflows import __version__; print(__version__)"
The SDCflows are written using Python 3.5 (or above), and are based on nipype.
SDCflows require some other neuroimaging software tools that are
not handled by the Python’s packaging system (Pypi) used to deploy